PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g045639m

Common Name

CISIN_1g045639mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 349aa MW: 38364.3 Da PI: 6.58

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g045639m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00083	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H orange1.1g045639m 148 YECKTCNRTFPSFQALGGHRASH 170 99**********99999998887 PP
2	zf-C2H2	13.1	0.0003	220	242	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H orange1.1g045639m 220 HECSICGAEFTSGQALGGHMRRH 242 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.55E-9	147	170	No hit	No description
Pfam	PF13912	3.2E-13	147	172	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	148	170	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.637	148	175	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	150	170	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.55E-9	215	242	No hit	No description
Pfam	PF13912	6.1E-13	219	244	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	220	242	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.723	220	242	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	222	242	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEEAQEEVLM INSNNKDQQS HNNNIVKGKR TKRQRPQSPV PFVVNGTIHD NTNLSSSPAV 60 SSAEEFFDST EEDEDMANCL ILLAQCQSTR ESPPKPKPAH YDIHEQEEIA QLQINNNVNN 120 SGMKFNSRRF LEAPGTGTGT GKGGCYVYEC KTCNRTFPSF QALGGHRASH KKPKAMLMND 180 DRLSLKSQHQ QQQQQQFLVS KSDDEEEDGN FRNGNSSKVH ECSICGAEFT SGQALGGHMR 240 RHRSAPVAAT AAAMATTNTT LSLTPMAVVE AGQDQPRKSS SSSSSSRNNL LSLDLDLNLP 300 APEDDPKESK LPFSSKQQQQ QQQQQQPQQQ QKSSLVFTAA AALVDCHY*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEEAQEEVLM INSNNKDQQS HNNNIVKGKR TKRQRPQSPV PFVVNGTIHD NTNLSSSPAV  60
SSAEEFFDST EEDEDMANCL ILLAQCQSTR ESPPKPKPAH YDIHEQEEIA QLQINNNVNN  120
SGMKFNSRRF LEAPGTGTGT GKGGCYVYEC KTCNRTFPSF QALGGHRASH KKPKAMLMND  180
DRLSLKSQHQ QQQQQQFLVS KSDDEEEDGN FRNGNSSKVH ECSICGAEFT SGQALGGHMR  240
RHRSAPVAAT AAAMATTNTT LSLTPMAVVE AGQDQPRKSS SSSSSSRNNL LSLDLDLNLP  300
APEDDPKESK LPFSSKQQQQ QQQQQQPQQQ QKSSLVFTAA AALVDCHY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006436528.1	0.0	zinc finger protein ZAT5
Refseq	XP_006485347.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A067DX55	0.0	A0A067DX55_CITSI; Uncharacterized protein
STRING	XP_006485347.1	0.0	(Citrus sinensis)
STRING	XP_006436528.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-44	C2H2 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g045639m