PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045583m
Common NameCISIN_1g045583mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 319aa    MW: 34936.7 Da    PI: 7.0566
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045583mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-161462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++eEd  l+++v+ +G+g +W + +++ g++R++k+c++rw++yl
  orange1.1g045583m 14 RGPWSPEEDATLKRYVETHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                       89*********************************************97 PP
2Myb_DNA-binding41.43.4e-1369111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g++T++Ed  +  +  q G++ W+ Ia++++ gRt++++k++w++
  orange1.1g045583m  69 GNFTEDEDHVICTLYSQIGSR-WSIIASRLP-GRTDNDVKNYWNT 111
                        89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.863962IPR017930Myb domain
SuperFamilySSF466894.9E-2811109IPR009057Homeodomain-like
SMARTSM007173.1E-121364IPR001005SANT/Myb domain
PfamPF002491.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-251569IPR009057Homeodomain-like
CDDcd001672.74E-91662No hitNo description
PROSITE profilePS5129422.25763117IPR017930Myb domain
SMARTSM007175.5E-1167115IPR001005SANT/Myb domain
PfamPF002491.8E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2370117IPR009057Homeodomain-like
CDDcd001671.31E-770111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKRYVE THGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGN FTEDEDHVIC TLYSQIGSRW SIIASRLPGR TDNDVKNYWN TKLKKKLLAG  120
KVSLLTSNNA NNSPIISGSN PTDTNHLHDS NPSISLPKSE ACDPQYPASP TQLSSSPSMP  180
LLTDHHDHIA YGLSTVNNHH FIPPHSAGMS FTSSTVSHQL GTSLKNSPVL TSSQEGSSVT  240
LPAGNNVNGG VEDADQILMD FGFGIGDPCD QYYVNNNGTL WYNHQEKATS HHDDLSNWYP  300
SLLAADSSYA DIKPQGLNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450765.20.0transcription factor MYB87
RefseqXP_006475979.10.0transcription factor MYB87-like
TrEMBLA0A067GJZ70.0A0A067GJZ7_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5Q7G80.0A0A2H5Q7G8_CITUN; Uncharacterized protein
STRINGXP_006475979.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-73myb domain protein 84