PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g045481m | ||||||||
Common Name | CISIN_1g045481mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 178aa MW: 20034 Da PI: 8.8843 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.6 | 1.2e-21 | 4 | 50 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i k n qvtfskRr+g++KKA+ELS+LC++++a+i+fs+ +k + + orange1.1g045481m 4 IPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSF 50 7789999**********************************997766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.927 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-23 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-23 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-23 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-10 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-10 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
ISKIPKKNNL QVTFSKRRAG VFKKASELST LCGVDIALIV FSPANKAFSF GHPNVDSILD 60 LYLARNPNPP SESSTDRLIE AHRNANIREL NMQLTQVLHQ LEVEKKHGEV LSEIRKASCR 120 QCWWEAPINE LGLHELEQLK TAMEELKKNV EQQANKILID SKNNPSPFFG LGFWTLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 4e-15 | 1 | 81 | 7 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-15 | 1 | 81 | 7 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-15 | 1 | 81 | 7 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-15 | 1 | 81 | 7 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-15 | 1 | 81 | 7 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-15 | 1 | 81 | 7 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-15 | 1 | 81 | 7 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-15 | 1 | 81 | 7 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-15 | 1 | 81 | 7 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-15 | 1 | 81 | 7 | 86 | Myocyte-specific enhancer factor 2A |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006480851.1 | 1e-122 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 8e-49 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A067D637 | 1e-127 | A0A067D637_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006480851.1 | 1e-121 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-51 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g045481m |
Publications ? help Back to Top | |||
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