PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045411m
Common NameCISIN_1g045411mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 390aa    MW: 43553.1 Da    PI: 4.777
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045411mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-151663148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  orange1.1g045411m 16 RGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                       89******************************99************97 PP
2Myb_DNA-binding52.41.2e-1669114148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T+eE++ ++++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
  orange1.1g045411m  69 RGNFTQEEEDTIIRLHESLGNR-WSKIASQLP-GRTDNEIKNVWNTHL 114
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-23766IPR009057Homeodomain-like
PROSITE profilePS5129414.0961163IPR017930Myb domain
SuperFamilySSF466894.77E-2914110IPR009057Homeodomain-like
SMARTSM007178.0E-121565IPR001005SANT/Myb domain
PfamPF002493.0E-141663IPR001005SANT/Myb domain
CDDcd001671.59E-81863No hitNo description
PROSITE profilePS5129425.59264118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2767118IPR009057Homeodomain-like
SMARTSM007172.4E-1568116IPR001005SANT/Myb domain
PfamPF002491.9E-1569114IPR001005SANT/Myb domain
CDDcd001671.41E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGKGRAPCCD KSQVKRGPWS PGEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTQEEEDTI IRLHESLGNR WSKIASQLPG RTDNEIKNVW NTHLKKRLSF  120
RDVKKDQESK ESSSISSPSS SSSSTIISSG KRRADTELDE HQCDQNNYVP KKPREGHGSM  180
TVSEKLVQQS SETEESNQIN TSKGVVMMTK ELLDSSCSSD NSVVSNSSQV DATRPKDQMG  240
TSQFGFSEPY DVAIGLNNLE EVNKPEIISI SDTGLEIPLE CDFDFWSMLD NLGPFQSHEV  300
EASQSTSFGE ASDNSREVDS RTWFQYLENE LGLEATTEDE IQNSAKVAAA ATADPIPQET  360
YETLLKPEVD PGVTYFQLWN ASLQSSVCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-27161184105C-Myb DNA-Binding Domain
1msf_C6e-27161184105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.164850.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475333.10.0transcription factor MYB63
RefseqXP_024038620.10.0transcription factor MYB63
TrEMBLA0A067FEI10.0A0A067FEI1_CITSI; Uncharacterized protein
STRINGXP_006422238.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.13e-76myb domain protein 58