PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g045357m | ||||||||
Common Name | CISIN_1g045357mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 26629.1 Da PI: 8.6465 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.6 | 9.1e-29 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C++lr++C +dC++ p++ ++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ dP++G+vg++++++++ orange1.1g045357m 2 SCNGCRILRKGCGDDCIIKPCLdwiksSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQ 93 6*********************9998667889************************************************************ PP DUF260 88 eqlkaelallke 99 +q++++++l ++ orange1.1g045357m 94 CQAAVDAVLKGK 105 ****99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.709 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-23 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSCNGCRILR KGCGDDCIIK PCLDWIKSSD AQANATLFLA KFYGRAGLIN LIEAGPQHLR 60 PAIFKSLLYE ACGRIVDPIS GSVGLLWSGK WEQCQAAVDA VLKGKTITQN PSSSSSSSSS 120 NNNAPAAAPW TLNVQSPPLK IYDIRHVSKD PSAANCSDKT KARAKRSWNR RPKAPVVGRE 180 SIQDQSSWLQ SQVISRSEDD YESIFSVETV EGSLDVNRNK QRWVQNGNGD VGLELTLCLP 240 PTNH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.8563 | 0.0 | callus| seed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006469084.1 | 1e-180 | LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 3e-71 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A067GBE8 | 1e-179 | A0A067GBE8_CITSI; Uncharacterized protein | ||||
STRING | XP_006469084.1 | 1e-180 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8463 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-71 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g045357m |