PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045349m
Common NameCISIN_1g045349mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 153aa    MW: 16912.4 Da    PI: 8.515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045349mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.3e-131462255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       r+  n++E+ RR  +++ +++L +l+P++      Kls  +iL  A+ YI +Lq
  orange1.1g045349m 14 RAQRNINEKHRRMLMKDLISQLASLIPSN-----SKLSMPQILDDATSYIMHLQ 62
                       8889************************8.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.6E-121275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.3951261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-131277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-101462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-61766No hitNo description
SMARTSM003534.1E-91867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MAGANSSAAG SSSRAQRNIN EKHRRMLMKD LISQLASLIP SNSKLSMPQI LDDATSYIMH  60
LQKNKESLER KKALLKGDDH TEPSVMNITT SGSTLEVNLI CGLNRNFMFH EIISILEEEA  120
AEVINVTRFN SGDRVIFSVQ SKVYITHLHV SV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015382168.21e-90transcription factor bHLH167-like
RefseqXP_015383298.11e-90transcription factor bHLH167-like
TrEMBLA0A067DB291e-107A0A067DB29_CITSI; Uncharacterized protein
STRINGXP_006470574.11e-86(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.13e-13bHLH family protein