PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045292m
Common NameCISIN_1g045292mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 674aa    MW: 74165 Da    PI: 6.2481
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045292mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.1e-2059114156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  orange1.1g045292m  59 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114
                        789999***********************************************998 PP
2START165.83e-5226441166206
                        CCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-E CS
              START  66 lddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRae 146
                        + d  qW+  +     +a+t+ev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ p+     +++
  orange1.1g045292m 264 WTDQNQWSSVFCgivsRAMTIEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGTWAVVDVSLDNLRPSPT----SKCR 351
                        556669***9999999******************************************************************94....5566 PP

                        ESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 147 llpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        ++pSg+li++++ng+skv+wvehv++++r++h+++++lv+sgla+gak+wvatl+rqce+
  orange1.1g045292m 352 RRPSGCLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCER 411
                        6*********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2239114IPR009057Homeodomain-like
SuperFamilySSF466893.26E-1944116IPR009057Homeodomain-like
PROSITE profilePS5007116.79556116IPR001356Homeobox domain
SMARTSM003895.9E-1957120IPR001356Homeobox domain
CDDcd000865.87E-1958117No hitNo description
PfamPF000461.9E-1759114IPR001356Homeobox domain
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
SMARTSM002341.1E-42198411IPR002913START domain
PROSITE profilePS5084811.078235264IPR002913START domain
SuperFamilySSF559611.48E-30237413No hitNo description
CDDcd088754.34E-94239410No hitNo description
PfamPF018524.7E-44267411IPR002913START domain
PROSITE profilePS5084831.954269414IPR002913START domain
Gene3DG3DSA:3.30.530.204.0E-6293411IPR023393START-like domain
SuperFamilySSF559613.46E-27431662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MFQPNTFESH HMFDMTRRSS ESDLGKLKED DYETKSGTET MEMEAPSGDD QDPSQHPKRK  60
RYHRHTQRQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKAQHERH  120
ENQILKAENQ KLRAENNRYK EALGNATCPN CGGPAALGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPLSSFPHLT PRSLDLGFTN LGTQSGFVGE MYGGCDLIRS ISGPSEADKP  240
MIVELAVAAM EEFLRMAQAG DPLWTDQNQW SSVFCGIVSR AMTIEVLSTG VAGNYNGALQ  300
VMTAEFQVPS PLVPTRENYF VRYCKQHSDG TWAVVDVSLD NLRPSPTSKC RRRPSGCLIQ  360
ELPNGYSKVI WVEHVEVDDR SVHNIYKPLV NSGLAFGAKR WVATLDRQCE RLASSMANNI  420
PAGDLCVITS PEGRKSMLKL AERMVTSFCT GVGASTAHAW TTLSATGSDD VRVMTRKSMD  480
DPGRPPGIVL SAATSFWIPV PPRRIFDFLR DENSRSEWDI LSNGGLVQEM AHIANGRDPG  540
NCVSLLRVNS ANSSQSNMLV LQESCTDSTG SYVIYAPVDI VAMNMVLSGG DPDYVALLPS  600
GFAILPDGPG FNGGGILEVG SGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIKCTVER  660
IKAAVMTDNA SCR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.32650.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468235.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_024950392.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_024950393.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_024950394.10.0homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A067G7G30.0A0A067G7G3_CITSI; Uncharacterized protein
STRINGXP_006468235.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]