PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g045278m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 221aa MW: 25759.8 Da PI: 8.6657 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98.5 | 9.4e-31 | 5 | 131 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +G++F+P++e+++ + L +k + +++ + ik++ di+ +ePwdL + + ++e++ wyfF++ ky++++r++r tk+g Wk t kd + orange1.1g045278m 5 MGYKFQPSNEQIL-YLLVEKRLNPHFSH-HPIKDIvDICGLEPWDLAtEsTPESEDQVWYFFCEPCYKYRESHRAHRRTKAGHWKITSKDSQ 94 7**********99.55666666666665.6799988**********843355668889********************************** PP NAM 92 vlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128 +++ ++ +g+kk L+fy +g +k t+W mhey++ orange1.1g045278m 95 IKA-RNGPTGTKKFLTFYrHGLPRKEAITEWGMHEYHV 131 ***.7889**********4457777789********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 34.162 | 3 | 149 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-32 | 4 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-15 | 5 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MENLMGYKFQ PSNEQILYLL VEKRLNPHFS HHPIKDIVDI CGLEPWDLAT ESTPESEDQV 60 WYFFCEPCYK YRESHRAHRR TKAGHWKITS KDSQIKARNG PTGTKKFLTF YRHGLPRKEA 120 ITEWGMHEYH VKDDSSYKKE FILCCITRKR NKKKKRGISA TDEGESSQQL VSPLQQSPSD 180 HSISNGYHSE ENSPTIPQQQ LQYNNSVSYP GNPTGQNTFT Y |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-14 | 6 | 155 | 20 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-14 | 6 | 155 | 20 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-14 | 6 | 155 | 20 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-14 | 6 | 155 | 20 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-14 | 6 | 155 | 23 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-14 | 6 | 155 | 23 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-14 | 6 | 155 | 23 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-14 | 6 | 155 | 23 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-14 | 6 | 155 | 23 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-14 | 6 | 155 | 23 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-14 | 6 | 155 | 23 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-14 | 6 | 155 | 23 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-14 | 6 | 155 | 20 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-14 | 6 | 155 | 20 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006465070.1 | 1e-150 | NAC domain-containing protein 7-like | ||||
Refseq | XP_024039824.1 | 1e-150 | NAC domain-containing protein 7-like | ||||
TrEMBL | A0A1S8ABU4 | 1e-110 | A0A1S8ABU4_CITLI; NAC domain containing protein | ||||
STRING | XP_006465070.1 | 1e-149 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13336 | 4 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35580.1 | 2e-27 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g045278m |