PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045251m
Common NameCISIN_1g045251mg, LOC102614556
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 164aa    MW: 18003.9 Da    PI: 6.3548
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045251mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.2e-053456123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C  C++ Fs+   L  H++ H
  orange1.1g045251m 34 YTCAFCKRGFSNAQALGGHMNIH 56
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-63260No hitNo description
Gene3DG3DSA:3.30.160.601.3E-43258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1773461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
METNSQASSI EKSSQILWSS DDLDSSDSGH VKSYTCAFCK RGFSNAQALG GHMNIHRKDR  60
AKLRQFSEEN LLSLDIAKAA NPSIEAPNIV SEDRGAVILE SSVQEKICTP KSKEEKMTRQ  120
LGESSSSSSH IDQYLDLELR LGPEPREASA SRITKDLYRS SSH*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Preferentially expressed in roots and flowers. Slightly expressed in leaves and stems. {ECO:0000269|PubMed:15486103}.
Functional Description ? help Back to Top
Source Description
UniProtActivation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter. {ECO:0000269|PubMed:15486103, ECO:0000269|PubMed:17220202}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480887.11e-117transcriptional regulator TAC1
SwissprotQ9SR342e-19TAC1_ARATH; Transcriptional regulator TAC1
TrEMBLA0A067EMC81e-115A0A067EMC8_CITSI; Uncharacterized protein
TrEMBLA0A2H5P6B21e-115A0A2H5P6B2_CITUN; Uncharacterized protein
STRINGXP_006480887.11e-116(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.14e-21C2H2 family protein
Publications ? help Back to Top
  1. Ren S,Johnston JS,Shippen DE,McKnight TD
    TELOMERASE ACTIVATOR1 induces telomerase activity and potentiates responses to auxin in Arabidopsis.
    Plant Cell, 2004. 16(11): p. 2910-22
    [PMID:15486103]
  2. Ren S,Mandadi KK,Boedeker AL,Rathore KS,McKnight TD
    Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1.
    Plant Cell, 2007. 19(1): p. 23-31
    [PMID:17220202]