PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g045249m | ||||||||
Common Name | CISIN_1g045249mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24106.3 Da PI: 5.2083 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.9 | 3.7e-20 | 9 | 53 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + e+k qvtfskRr g++ KA EL+vLC+aev +i+fs++gk+ orange1.1g045249m 9 KLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKI 53 56899999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00265 | 1.55E-35 | 1 | 77 | No hit | No description |
PROSITE profile | PS50066 | 24.656 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-29 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-26 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-19 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.8E-22 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-19 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-19 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
GRQKIQIKKL EDKNSLQVTF SKRRSGLFSK AMELCVLCGA EVGIIVFSPN GKIFLAGHPD 60 FDKILNRYLD QNHSSLDEVN TIPCVQQHNK EYEDAMQELE KEKKRGKMIE EEKKKNKSNG 120 RFWWQEGNII DDMGIEELEE YLKAMKKLKG KVEMRVNEIM MNGYLAPNMN LGNDHPDAFG 180 NINVNVNEDI SVSGGIDGGV DFDFGFDEHF N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 8e-17 | 1 | 82 | 2 | 83 | MEF2 CHIMERA |
6bz1_B | 8e-17 | 1 | 82 | 2 | 83 | MEF2 CHIMERA |
6bz1_C | 8e-17 | 1 | 82 | 2 | 83 | MEF2 CHIMERA |
6bz1_D | 8e-17 | 1 | 82 | 2 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024957821.1 | 1e-153 | agamous-like MADS-box protein AGL23 | ||||
TrEMBL | A0A067E2Q2 | 1e-153 | A0A067E2Q2_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006487056.1 | 1e-153 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15814 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 9e-35 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g045249m |