PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g045032m | ||||||||
Common Name | CISIN_1g045032mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 355aa MW: 39139.1 Da PI: 5.0588 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83.1 | 2.6e-26 | 113 | 169 | 6 | 59 |
-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 6 nWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +WrKYGqK++ g+++pr+YYrCt++ gC ++k+v+rs+edp+++eitY+g+H++ orange1.1g045032m 113 SWRKYGQKDILGAKYPRGYYRCTYRngqGCLATKQVQRSDEDPTIFEITYRGNHTCA 169 7***********************99999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-25 | 111 | 170 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.76E-23 | 113 | 170 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-34 | 113 | 170 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-24 | 113 | 168 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.759 | 114 | 166 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MDRNMGEWEK NSLINVLLQG RESAKQLQIQ LNLRTSSSSH DQTRGIMLVQ KIISSYEKAL 60 SMLNFCGSSS STQEPQPPAG PVTESPTSLT GSPLSEDSDR DVKDPQEDVS KKSWRKYGQK 120 DILGAKYPRG YYRCTYRNGQ GCLATKQVQR SDEDPTIFEI TYRGNHTCAQ ASNAILPPPT 180 QPETKEPDTA AIEPQQHNYY QTTPQQQPED ALLNLRKGLK IVTEDLDVKP QQQSSIPPFH 240 FPSPSVVIHP NFTGNFSPSF VSPQASEANN YTFSTSPPSG MNNFQGNQNF QSSSQDSEVN 300 EIISGAAAAA ATSATNPPTV DLDFPFGNIE FDPNFTFDNL GFFSSFHHSE KNSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-18 | 113 | 166 | 21 | 74 | Disease resistance protein RRS1 |
5w3x_D | 3e-18 | 113 | 166 | 21 | 74 | Disease resistance protein RRS1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006490570.1 | 0.0 | probable WRKY transcription factor 41 isoform X1 | ||||
Refseq | XP_024040004.1 | 0.0 | probable WRKY transcription factor 41 isoform X1 | ||||
Swissprot | Q8H0Y8 | 3e-45 | WRK41_ARATH; Probable WRKY transcription factor 41 | ||||
TrEMBL | A0A067EQJ5 | 0.0 | A0A067EQJ5_CITSI; Uncharacterized protein | ||||
STRING | XP_006490570.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 3e-47 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g045032m |
Publications ? help Back to Top | |||
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