PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045031m
Common NameCISIN_1g045031mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 181aa    MW: 20278.2 Da    PI: 9.7692
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045031mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.2e-15271031899
                        --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +p +f++++++++  + tlt++  s rsW+v+l  + ++ +++l++GW +F ++n L + +f++F++dg+++f   v++f+k
  orange1.1g045031m  27 IPQEFLKHISKESSDKATLTVQ-GSARSWTVTL--SETGIGVFLQDGWLKFLRDNSLGDSEFLLFTYDGNMCF--SVQIFNK 103
                        9*****7776554444444444.477*******..**************************************..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-1713106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1913106IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-1115104IPR003340B3 DNA binding domain
CDDcd100171.38E-1127102No hitNo description
PROSITE profilePS5086311.91427104IPR003340B3 DNA binding domain
PfamPF023624.5E-1327103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEKKWENQGD AAPCFYHIIL DGKVPQIPQE FLKHISKESS DKATLTVQGS ARSWTVTLSE  60
TGIGVFLQDG WLKFLRDNSL GDSEFLLFTY DGNMCFSVQI FNKNGCERIV AASDQIRMNQ  120
EFVGFANGTG KDLPSQKSNK PKSMRKKKNL NCMIKSGFNV QASQTRENQD GRPKMKKPAM  180
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Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386375.11e-132B3 domain-containing protein Os01g0723500
TrEMBLA0A067DLM81e-132A0A067DLM8_CITSI; Uncharacterized protein
STRINGXP_006423085.11e-129(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-14VERDANDI