PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044976m
Common NameCISIN_1g044976mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CAMTA
Protein Properties Length: 847aa    MW: 94511.2 Da    PI: 6.333
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044976mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.12.2e-55141274116
               CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                        e ++rwlk+ e++ iL+n++k+elt+e++++p+sgsl+L+n++++r+frkDG++w+kkkdg++v E+he+LKvg+ e+l+cyYah+e+np+f
  orange1.1g044976m  14 EaQTRWLKPAEVLFILQNYDKYELTQEPPQKPNSGSLFLFNKRVLRFFRKDGHNWRKKKDGRAVGEAHERLKVGNAEALNCYYAHGEQNPNF 105
                        5599**************************************************************************************** PP

               CG-1  95 qrrcywlLeeelekivlvhyle 116
                        qrr+yw+L+ ++e+ivlvhy+e
  orange1.1g044976m 106 QRRSYWMLDPAYEHIVLVHYRE 127
                        ********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.5868134IPR005559CG-1 DNA-binding domain
SMARTSM010763.7E-7811129IPR005559CG-1 DNA-binding domain
PfamPF038595.2E-4914127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.0E-9284371IPR013783Immunoglobulin-like fold
CDDcd001022.18E-4285368No hitNo description
SuperFamilySSF812962.8E-17285368IPR014756Immunoglobulin E-set
PfamPF018336.0E-9285361IPR002909IPT domain
Gene3DG3DSA:1.25.40.201.9E-15478574IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.626480572IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.13E-16482574IPR020683Ankyrin repeat-containing domain
CDDcd002044.85E-10485572No hitNo description
PfamPF127962.1E-9496573IPR020683Ankyrin repeat-containing domain
SMARTSM002484.4E-4513542IPR002110Ankyrin repeat
PROSITE profilePS5008811.381513545IPR002110Ankyrin repeat
SMARTSM00248750552581IPR002110Ankyrin repeat
SMARTSM0001515630652IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.041631660IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.92E-7681735IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.23688710IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206689718IPR000048IQ motif, EF-hand binding site
PfamPF006120.012691709IPR000048IQ motif, EF-hand binding site
SMARTSM000159.1E-4711733IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.285712737IPR000048IQ motif, EF-hand binding site
PfamPF006124.6E-5714733IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MMLAGYDVDF LFREAQTRWL KPAEVLFILQ NYDKYELTQE PPQKPNSGSL FLFNKRVLRF  60
FRKDGHNWRK KKDGRAVGEA HERLKVGNAE ALNCYYAHGE QNPNFQRRSY WMLDPAYEHI  120
VLVHYREITE GRPSPGSVVV SPGASSTFTL SPASYVTPNP GPTSLKSDFY EPYQSISSPS  180
SIEVTSEMAS KDNAVDSKGG STSSEAEVSQ ALRKLKEQLS LNDDMFEEID SLSRQDLDSE  240
SKISQQDQNS TNQFQLHNNF YQDHIGVPLE ADLRLTVAQK QKFAIREISP DWGYANESTK  300
VIIVGSFLCD PSESAWSCMF GDTEVPLQII QEGVIRCEAP PRLPGKVTLC ITSGNRESCS  360
EVKEFDYRVK PNSYDNWSQK EATKSHDELL LLVRFVQMLL SDSSVNKEEG VELGYHELRG  420
MKADDDLWGQ VIDSLLVGSG NSLDTIDWLL QEVLKDKLQQ WLSSKSLRES DQPGCSLSKK  480
EQGIIHMVAG LGFEWALNPI LSCGVSINFR DINGWTALHW AARFGREKMV AALLASGASA  540
GAVTDPNPLD PTGRTPAFIA ASSGHKGLAG YLSEVALTSH LSSLTLEESE LSKNSAEVQA  600
EITVNSISNG NISSTEDQLS LKDTLAAVRN AAQAAARIQS AFRAHSFRKR QQRDLAAIGA  660
SLDEYGINPD DIPGLSAISK LAFRNARDHN SAALSIQKKY RGWKGRKDYL AIRQKVVKIQ  720
AHVRGYQVRK KYKVIWAVGV LDKVILRWRR KGVGLRGFRP ETESNDESDD EDILKVFRRQ  780
KVDATIDESV SRVLSMVDSP TARNQYRRML ERYRQAKAEL GETSEAAALS AGDAVDMDDE  840
STYRFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024041283.10.0calmodulin-binding transcription activator 4 isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A067GQG90.0A0A067GQG9_CITSI; Uncharacterized protein
STRINGXP_006438003.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]