PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044959m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ZF-HD
Protein Properties Length: 160aa    MW: 18486.2 Da    PI: 10.6659
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044959mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.75.8e-28253658
        ZF-HD_dimer  6 YkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                       Y+eC++NhAas+G +a+DGCgEf+++ g++gt++a++CaACgCHR+FHR+e +
  orange1.1g044959m  2 YRECRRNHAASIGRYAYDGCGEFLKA-GKDGTKEAFHCAACGCHRSFHRKELS 53
                       *************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152324.22251IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.1E-26251IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.2E-24251IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-15257IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.6E-2264133IPR009057Homeodomain-like
SuperFamilySSF466891.7E-1365133IPR009057Homeodomain-like
PROSITE profilePS500718.77873133IPR001356Homeobox domain
TIGRFAMsTIGR015654.8E-2476131IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
SYRECRRNHA ASIGRYAYDG CGEFLKAGKD GTKEAFHCAA CGCHRSFHRK ELSLSVASIH  60
RRRRHHDHEH KNYKAKTKRT KITEEQKSKM RRFADKLGWK PQRHDEEEVG KFCGEVGITR  120
KMFKVWLNNN RRRPVPVRVP EKCRAASVVG VKNLLAAEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-14791312173ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431739.11e-115zinc-finger homeodomain protein 5
SwissprotQ9SB614e-35ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A2H5Q9281e-114A0A2H5Q928_CITUN; Uncharacterized protein
TrEMBLV4UZS21e-114V4UZS2_9ROSI; Uncharacterized protein
STRINGXP_006431739.11e-114(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1866867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-33homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]