PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g044940m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 227aa MW: 26099.5 Da PI: 8.7579 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.5 | 2.1e-26 | 8 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp+G++F P+de+lv++yL +k++g +++++e +k+vd+y++ ePwd+ k + ++ +++yfF++ +kk+ +g+r r++ sg W+ orange1.1g044940m 8 LPVGCKFLPSDEQLVHYYLFNKISGIPTPFAEYfVKDVDLYDFdEPWDIWKrfggTNLEDGEDIYFFTRLKKKSINGSRIDRKVGSGAWQGE 99 799************************9998877********978****753443222356688**************************88 PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k v s ++ +g kk + + k ++p+ + W+mhey++ orange1.1g044940m 100 AAGKLVRSCnFNRPIGSKKRFRYEKDNSPH--NGCWIMHEYTM 140 88887777546788*********9666666..99*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.18E-32 | 7 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.686 | 8 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-17 | 9 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MQERSRILPV GCKFLPSDEQ LVHYYLFNKI SGIPTPFAEY FVKDVDLYDF DEPWDIWKRF 60 GGTNLEDGED IYFFTRLKKK SINGSRIDRK VGSGAWQGEA AGKLVRSCNF NRPIGSKKRF 120 RYEKDNSPHN GCWIMHEYTM NASLLPQNHH CSSDCVLCRL RKNGGQSVGI KDSRKKIKID 180 KQVEDNDHQP TGKSNSRKRL TPIDDATYPH LADDKFLVSN ELVYTD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-18 | 8 | 160 | 15 | 165 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015386956.1 | 1e-136 | NAC domain-containing protein 30-like | ||||
TrEMBL | A0A067F1N3 | 1e-147 | A0A067F1N3_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006430478.1 | 1e-130 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13879 | 3 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 3e-23 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g044940m |