PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g044894m | ||||||||
Common Name | CISIN_1g0448942mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 212aa MW: 24166.4 Da PI: 8.6599 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.1 | 1.9e-20 | 44 | 130 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f n+YAke GFs+r+++sk k+++ i+++++vC keg+++++k + +r+r r gC akl+v k++ +k++v+ +++eHnH+l+ orange1.1g044894m 44 FNNKYAKEGGFSIRINSSKICKESNDIIRKEYVCLKEGQARQSKVV--NCKRRRGIIRGGCSAKLVVVKSEFDKYMVHIFVEEHNHALS 130 889************************************9998766..899999*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-18 | 44 | 130 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MGPHCRNVAG QSNCEDSLYI PEVALDRKPY KGQEFDTLDD AYEFNNKYAK EGGFSIRINS 60 SKICKESNDI IRKEYVCLKE GQARQSKVVN CKRRRGIIRG GCSAKLVVVK SEFDKYMVHI 120 FVEEHNHALS SPRRVHLLRS HRSMSAVQKS LSQQLAAVNI PTCQQISLFE LQAEGLQNMG 180 SVHRDFYNND RNLRNELKGH DADMLYEHFS V* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY336943 | 0.0 | AY336943.1 Poncirus trifoliata NBS-LRR-type disease resistance protein-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015389364.1 | 1e-128 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A067DIQ9 | 1e-150 | A0A067DIQ9_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006442061.1 | 1e-121 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24003 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-21 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g044894m |