PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g044766m | ||||||||
Common Name | CISIN_1g044766mg, LOC102627868 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LFY | ||||||||
Protein Properties | Length: 399aa MW: 44468.3 Da PI: 7.8355 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 637.3 | 2.4e-194 | 1 | 377 | 1 | 385 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseap.....leaaaaaaark..lr.....eleelfkayGvryltvakiaelGftvstLvd 80 mdpeaf+aslfkwdpr ++a+ppar++ e++ ++++ + aaaa++ +r +leelf+ayG+ry t+akiaelGftv+tL+d orange1.1g044766m 1 MDPEAFTASLFKWDPRVVVAPPPARVQLEQVSQPPAvplgaA----AAAAYSalVRprelgGLEELFQAYGIRYHTAAKIAELGFTVNTLLD 88 9******************9***9999888776665443321....222222223366777******************************* PP FLO_LFY 81 mkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaagsggeglgea 171 mkdeeld++m+sl ++fr++llvGeryGikaavraerrrl+e++ +rr++ls+d++t a+dalsqeglseepvq+ keaagsgg+g + orange1.1g044766m 89 MKDEELDEMMNSLGHLFRWELLVGERYGIKAAVRAERRRLDEDD--LRRRHFLSSDTTTnAVDALSQEGLSEEPVQQDKEAAGSGGGG--PW 176 ******************************************87..78888898887766************************9999..78 PP FLO_LFY 172 elvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefL 263 e++ ++ kk++ +k r ++ d + e+e+d+de g+g +g+erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL orange1.1g044766m 177 EVAEKK--------KKQRGRKGPRP-----RKVVDVNLEDENDDDEYGGGCGGMERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFL 255 776544........23311111111.....2345777888899999********************************************** PP FLO_LFY 264 lqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdi 355 +qvq+iakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdi orange1.1g044766m 256 IQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDI 347 ******************************************************************************************** PP FLO_LFY 356 davfnahprLsiWYvPtkLrqLChlerska 385 da+fnahprL iWYvPt+LrqLCh+er+ a orange1.1g044766m 348 DAIFNAHPRLGIWYVPTRLRQLCHAERNGA 377 ***************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.6E-204 | 1 | 376 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MDPEAFTASL FKWDPRVVVA PPPARVQLEQ VSQPPAVPLG AAAAAAYSAL VRPRELGGLE 60 ELFQAYGIRY HTAAKIAELG FTVNTLLDMK DEELDEMMNS LGHLFRWELL VGERYGIKAA 120 VRAERRRLDE DDLRRRHFLS SDTTTNAVDA LSQEGLSEEP VQQDKEAAGS GGGGPWEVAE 180 KKKKQRGRKG PRPRKVVDVN LEDENDDDEY GGGCGGMERQ REHPFIVTEP GEVARGKKNG 240 LDYLFHLYEQ CRDFLIQVQN IAKERGEKCP TKVTNQVFRY AKKAGASYIN KPKMRHYVHC 300 YALHCLDEEA SNALRRAFKE RGENVGAWRQ ACYKPLVAIA ARQGWDIDAI FNAHPRLGIW 360 YVPTRLRQLC HAERNGAGAA ASSSVSAGAE HSVILKPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-109 | 216 | 375 | 2 | 161 | PROTEIN LEAFY |
2vy2_A | 1e-109 | 216 | 375 | 2 | 161 | PROTEIN LEAFY |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In developing inflorescences, leaf primordia and very young leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY338976 | 0.0 | AY338976.1 Citrus sinensis LEAFY (LFY) gene, complete cds. | |||
GenBank | DQ995347 | 0.0 | DQ995347.1 Citrus unshiu LEAFY (LFY) gene, complete cds. | |||
GenBank | DQ995348 | 0.0 | DQ995348.1 Citrus maxima LEAFY (LFY) gene, complete cds. | |||
GenBank | DQ995349 | 0.0 | DQ995349.1 Citrus reticulata LEAFY (LFY) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436969.1 | 0.0 | floricaula/leafy homolog | ||||
Refseq | XP_006485166.1 | 0.0 | floricaula/leafy homolog | ||||
Swissprot | O04064 | 0.0 | FLLH_POPTR; Floricaula/leafy homolog | ||||
TrEMBL | A0A067F352 | 0.0 | A0A067F352_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PJA8 | 0.0 | A0A2H5PJA8_CITUN; Uncharacterized protein | ||||
TrEMBL | V4VCY4 | 0.0 | V4VCY4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006485166.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006436969.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7907 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-149 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g044766m |
Entrez Gene | 102627868 |
Publications ? help Back to Top | |||
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