PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g044722m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 273aa MW: 31320.8 Da PI: 8.8629

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g044722m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.1	4.7e-29	137	191	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+ Wt++LHe+Fve+v++LGGsekAtPk+il+lmk k L++ +vkSHLQkYR+ orange1.1g044722m 137 KKRITWTKDLHEHFVECVNRLGGSEKATPKAILKLMKSKELSILQVKSHLQKYRS 191 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.714	134	194	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-16	135	191	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-25	135	192	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.3E-23	137	192	IPR006447	Myb domain, plants
Pfam	PF00249	6.2E-8	141	190	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-13	222	268	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MEAQSQEKQN LEPGKMPSSI ISSYHLQELA SAFYLTDQCF FGFHQNQHKN NEVIEASLPP 60 SNQFSGDNFS KKLSELDTLE SLVLSSNRNS KFPRKNSSFP TPSESSQNTK NMSIFSSEEK 120 HSCGLISDSY RHILSNKKRI TWTKDLHEHF VECVNRLGGS EKATPKAILK LMKSKELSIL 180 QVKSHLQKYR SEKLISDQSL QGFPEKTVCI NDIPQLYMKM GMQIREALQL QLELEKHLHD 240 QLEMQMNLQK LIEDQGKQVK MMLEKQLKSN QK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-18	137	193	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-18	137	193	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-18	137	193	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-18	137	193	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-18	137	193	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-18	137	193	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-18	137	193	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-18	137	193	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.11307	0.0	flower

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024949055.1	0.0	protein PHR1-LIKE 1-like isoform X1
TrEMBL	A0A067E4M3	1e-178	A0A067E4M3_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006429843.1	1e-172	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM27531	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-38	G2-like family protein

Link Out ? help Back to Top
Phytozome	orange1.1g044722m