PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g044652m | ||||||||
Common Name | CISIN_1g044652mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 554aa MW: 60016.4 Da PI: 6.6771 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.7e-09 | 359 | 406 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq orange1.1g044652m 359 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 406 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.02E-16 | 353 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.15E-10 | 353 | 410 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.9E-17 | 355 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 355 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-6 | 359 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 361 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MENEFFLNAG IPAPVAMPIW PSAAMEIQIQ ATNEMMNCSS EQSSDCFFNP NNWEKSTDHS 60 LQFDSALSSI VSSPAASNSN ISNESSVIRE LIGKLGNIGN NSGAGEITPH SLAPYINNNS 120 NNNNGSSSTN ASCYTTPLNS PPKLNLPMSL GNSMPLNSSV AEFSADPGFA ERAARFSRFG 180 SRSFNGRSTG QFVPNHNPDQ FGLSRSNNNP NPMTANEKLP RVSSSPSLKV LGSQAQATGN 240 KSPQDRSELA NSQEESSVSE QVPNDFNSRK RKAVSKGKGK ETAASPSVNN TTKVAEANAS 300 ESSKNKRCKP NEGKANGNGA VKAEDEGDDK QAKANNAKPP EPPKDYIHVR ARRGQATDSH 360 SLAERVRREK ISERMKLLQD LVPGCNKVTG KALMLDEIIN YVQSLQRQVE FLSMKLASVN 420 TRLELNVDAL MSKDIYQPNK PLPHSIFQID SSASAFFSHQ PQQNPALHGN ISNGTMTQCP 480 VDPLDNALCR NLSMQLPQLE QFTETIPQFQ NFGEDDLQSI VQMGFGQNPN SETSLQSQSF 540 HGSNQAPHMK AEL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00660 | PBM | Transfer from Pp3c6_9520 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006437241.1 | 0.0 | transcription factor bHLH62 | ||||
Refseq | XP_015387638.1 | 0.0 | transcription factor bHLH62 isoform X1 | ||||
TrEMBL | A0A067FBM5 | 0.0 | A0A067FBM5_CITSI; Uncharacterized protein | ||||
STRING | XP_006484808.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006437241.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2332 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-96 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g044652m |