PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044606m
Common NameCISIN_1g044606mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 414aa    MW: 47032.6 Da    PI: 6.7987
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044606mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029277299123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC+ C+k+F++   L  H  +H
  orange1.1g044606m 277 YKCETCKKVFKSYQALGGHRASH 299
                        9************9999998887 PP
2zf-C2H211.90.00067335357123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp C ++Fs+   L  H rtH
  orange1.1g044606m 335 HECPVCFRVFSSGQALGGHKRTH 357
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.3464168IPR007087Zinc finger, C2H2
SMARTSM003550.374163IPR015880Zinc finger, C2H2-like
PfamPF139123.1E-44164IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SMARTSM003550.023277299IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.63E-7277299No hitNo description
PfamPF139123.4E-11277301IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034277304IPR007087Zinc finger, C2H2
PROSITE patternPS000280279299IPR007087Zinc finger, C2H2
SuperFamilySSF576672.63E-7330357No hitNo description
PfamPF139124.6E-11334357IPR007087Zinc finger, C2H2
SMARTSM003550.15335357IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452335357IPR007087Zinc finger, C2H2
PROSITE patternPS000280337357IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
FPILSHRKEK PPELTTFKLL FIIYVYVFFK KRKSLFVMEK HKCRLCFKNF SNGRALGGHM  60
RSHMLNLPIP QKIQEEEEER EHRPHHQQLS FEIETESASS PSSSTSPSEE DDEEKSLFYG  120
LRENPKRSIR LVDPEFSFGV VDASAAAAAA ASASVVLQDR ESETESSKNP TRRRSKRTRK  180
LEQQHRQELD IIKKLKLNKS KNTIESSLWG HEPEPVSSIS DTTTEEDQQQ HHHDLIMFRQ  240
QDDDEYEDEE AEKSMDETDE SEEFKSFNNK NRSRGKYKCE TCKKVFKSYQ ALGGHRASHK  300
KIKFYTPVQE TELDQENAGA SINLASPPLS VKKVHECPVC FRVFSSGQAL GGHKRTHVTG  360
LVASTSARSA SASTKLGENL IDLNLPAPID DDDISQIELS AVSDAEFVNH IKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171195RRRSKRTRKLEQQHRQELDIIKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490850.20.0zinc finger protein ZAT9-like
TrEMBLA0A067HD430.0A0A067HD43_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006490850.10.0(Citrus sinensis)
STRINGXP_006445328.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-41C2H2-like zinc finger protein