PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g044584m | ||||||||
Common Name | CISIN_1g044584mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 24285 Da PI: 6.8023 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 5e-19 | 102 | 153 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 gy+GVr+++ +g+++Ae rdp++ng +r +lg++ t+e+Aa a+++a+ kl+g+ orange1.1g044584m 102 GYRGVRRRP-WGKYAAEMRDPKKNG--ARAWLGTYETPEDAAMAYDRAAFKLRGA 153 8********.***********9998..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-13 | 102 | 152 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 102 | 161 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.854 | 102 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-34 | 102 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-30 | 103 | 161 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-13 | 103 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.26E-29 | 103 | 162 | No hit | No description |
PRINTS | PR00367 | 1.5E-13 | 142 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MYGVSSFGFE DPDIGLLESI QEYLLTDDIF EEAPAAIKSE NGEPLTSSPH HSSFMSSLWS 60 DLLPVEDDLA SGSASIVGSN PFDGNVIDSN VMLKHDPRRG VGYRGVRRRP WGKYAAEMRD 120 PKKNGARAWL GTYETPEDAA MAYDRAAFKL RGAKAKLNFP HLIGSAHCRE PIRVNPRRRP 180 QSLDSSSSSS SSSSGTSTTA FSNSKISASA SAAVDHQFVI NWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-28 | 99 | 165 | 2 | 68 | ATERF1 |
3gcc_A | 1e-28 | 99 | 165 | 2 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.3005 | 9e-92 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015381529.1 | 1e-142 | ethylene-responsive transcription factor 2-like | ||||
Refseq | XP_024045080.1 | 1e-142 | ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A067HCE4 | 1e-163 | A0A067HCE4_CITSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 7e-37 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g044584m |