PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g044541m | ||||||||
Common Name | CISIN_1g044541mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 25518.3 Da PI: 4.3621 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5.1e-06 | 210 | 233 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF++ L++H + H orange1.1g044541m 210 FPCKSCNRSFTTEGGLQSHTKAkH 233 89*****************99877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.741 | 210 | 237 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.006 | 210 | 233 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.2E-5 | 210 | 232 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 212 | 233 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MFLASLTALC FVPATDDDDN SDSDEDKMDI RLVSNGKPEL QAKPLSEKPI AVEPSASTAK 60 QNKKDVKPKL KADGSDSDDS DLNTSSSDDD ETSDDENPNL VNRDGSSDES SGELDESDDD 120 EDDEGTDESE SDDEDEETPK KAESSKKRPV ESASKTYVPD KKAKFVTPQK TEEKKGVSHI 180 ATPHPSKKSA KTPANNDQTK QQPHKSGGSF PCKSCNRSFT TEGGLQSHTK AKHGAPA* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Csi.3416 | 1e-178 | seed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006481903.1 | 1e-154 | histone deacetylase HDT1 isoform X1 | ||||
TrEMBL | A0A067F4H2 | 1e-166 | A0A067F4H2_CITSI; Uncharacterized protein | ||||
STRING | XP_006481903.1 | 1e-153 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2027 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03740.1 | 2e-22 | histone deacetylase 2C |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g044541m |