PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g044532m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 148aa MW: 16795.2 Da PI: 10.6406 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.4 | 3.9e-18 | 15 | 61 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien+ r +tfskRr gi KKA+EL +L++ e+a+++fs++gk + orange1.1g044532m 15 KRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPF 61 79******************************************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.137 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-27 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-22 | 8 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-18 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-21 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-18 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-18 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MAAKKTKGRQ KIQMKRIENE DGRLITFSKR RSGIYKKASE LVTLTGSEIA ILVFSQSGKP 60 FSFGHPSIEA PVNDNTHPLV EAHRQMRRGK ETQPRWWETP VNELNHQELL QMDATIDNLH 120 KTFLARLNEK TAAASSSMAP PMYFHHK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hbx_A | 2e-14 | 3 | 76 | 6 | 79 | SERUM RESPONSE FACTOR |
1hbx_B | 2e-14 | 3 | 76 | 6 | 79 | SERUM RESPONSE FACTOR |
1hbx_D | 2e-14 | 3 | 76 | 6 | 79 | SERUM RESPONSE FACTOR |
1hbx_E | 2e-14 | 3 | 76 | 6 | 79 | SERUM RESPONSE FACTOR |
1srs_A | 2e-14 | 3 | 76 | 6 | 79 | PROTEIN (SERUM RESPONSE FACTOR (SRF)) |
1srs_B | 2e-14 | 3 | 76 | 6 | 79 | PROTEIN (SERUM RESPONSE FACTOR (SRF)) |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269|PubMed:18713950}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006492961.1 | 4e-95 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q4PSU4 | 1e-27 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | V4RKB4 | 6e-99 | V4RKB4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421333.1 | 1e-99 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-30 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g044532m |
Publications ? help Back to Top | |||
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