PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g044463m | ||||||||
Common Name | CISIN_1g044463mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 233aa MW: 27351 Da PI: 6.8006 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.9 | 2.4e-15 | 32 | 119 | 3 | 97 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 k+ + vl+++ l++p++f++++g++ s +l+ ++g +W+v l ++k++ +++ GW++Fv++ + +g f+ F+++++s+f ++ orange1.1g044463m 32 KII-FPFVLAEKKLRIPRDFVKKFGHE--LSNGAQLTVPDGSVWQVAL--TRKGKDIWFHYGWEDFVESYSISAGYFLFFSYEKNSTF--HI 116 544.355777788***********966..777899*************..9*******************************999988..66 PP EEE CS B3 95 kvf 97 +f orange1.1g044463m 117 IIF 119 665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.33E-22 | 25 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-22 | 27 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.00E-16 | 28 | 120 | No hit | No description |
PROSITE profile | PS50863 | 12.915 | 29 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-14 | 30 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-12 | 32 | 118 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MTERAAATWL FEQQWRKRLN PGADVSSPHF FKIIFPFVLA EKKLRIPRDF VKKFGHELSN 60 GAQLTVPDGS VWQVALTRKG KDIWFHYGWE DFVESYSISA GYFLFFSYEK NSTFHIIIFN 120 LDACEVDYLY VGEESMKDEQ NSDPENEKSV EHVEQQSRKR KMEEVAEMDE PNSDNNFNLS 180 VVLKKMGIYV TPRYRRFSAE ESKRAISFAR IVQPKNSSFM VILEQHFKSC RDV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 161 | SRKRKM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.3335 | 0.0 | seed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423710.1 | 1e-174 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A067EFV6 | 1e-173 | A0A067EFV6_CITSI; Uncharacterized protein (Fragment) | ||||
TrEMBL | V4SDP1 | 1e-172 | V4SDP1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006423710.1 | 1e-173 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-32 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g044463m |