PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044381m
Common NameCISIN_1g044381mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 420aa    MW: 49162.1 Da    PI: 6.5902
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044381mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.21.3e-221763176128
                NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkat.gkdkevlsk 95 
                        rF Ptdeelv+ yLk+ v +++l+++++i + d++ + P+ L + ++++e+++ yfF+  +     g+ ++r++ +gyWk t g d ++ + 
  orange1.1g044381m 176 RFCPTDEELVTLYLKNLVLDQPLPTNNFIID-DVHVLGPQYLSAIFQKQEEKImYFFTWPSY---IGNCRSRVAGNGYWKDTeGDDIKIGT- 262
                        9***********************9777544.788899****96665655544499998765...367889999******76266777777. PP

                NAM  96 kgelvglkktLvfy...........k...........grapkgektdWvmheyrl 128
                        k++ +g kktL++y           +           +++++++kt+W+mheyr+
  orange1.1g044381m 263 KENPIGYKKTLIYYqfegnysgegaRmppfyqfqgnyNHSKDAKKTSWIMHEYRI 317
                        9999**********776666665550555555555557889999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.1591121IPR003441NAC domain
SuperFamilySSF1019412.48E-112121IPR003441NAC domain
PfamPF023655.6E-5291IPR003441NAC domain
PROSITE profilePS5100525.556171348IPR003441NAC domain
PfamPF023656.3E-17176317IPR003441NAC domain
SuperFamilySSF1019412.62E-28176348IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MYFFTRPTYR DPHYRVAGNG YWKESVGRDI PIGSEEDPIG YQKTLVYYEF KRNYYDPNGD  60
IMLNLCNQYK YHGNYSEEDV IKTSWIMNEC RINDKRSLPR TQWEAYLMQK NKWFLCKVYK  120
QETEHKNKDD PQDRSGNNNN RFRSADEHSS KGFITLPRSN TLLHSRQDLS GSNYNRFCPT  180
DEELVTLYLK NLVLDQPLPT NNFIIDDVHV LGPQYLSAIF QKQEEKIMYF FTWPSYIGNC  240
RSRVAGNGYW KDTEGDDIKI GTKENPIGYK KTLIYYQFEG NYSGEGARMP PFYQFQGNYN  300
HSKDAKKTSW IMHEYRINDQ HNLPLACTQN EAYLIKNNKW LLCKIYNQEV EIENRDELDG  360
KVCSINADMD TDDTGAVSIQ KPSTSNKRRE IECDCCAVLC FMCKKLRLGC AGEEEDVAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-1417635320173Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024958484.13e-79NAC domain-containing protein 46-like
RefseqXP_024958485.13e-79NAC domain-containing protein 46-like
RefseqXP_024958486.13e-79NAC domain-containing protein 46-like
TrEMBLA0A067EIK40.0A0A067EIK4_CITSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.18e-20NAC domain containing protein 32