PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g044287m | ||||||||
Common Name | CISIN_1g044287mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NF-YB | ||||||||
Protein Properties | Length: 189aa MW: 20913.1 Da PI: 5.1768 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 170.5 | 1.9e-53 | 31 | 126 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +eq+r+lPianv+rimk++lPanakisk+aket+qecvsefisf+tseas+kc++e+rkt+ngdd++wal+tlGf+dy+ p++ yl+kyrel orange1.1g044287m 31 KEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLHKYREL 122 89****************************************************************************************** PP NF-YB 94 egek 97 ege+ orange1.1g044287m 123 EGER 126 *997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.7E-53 | 27 | 158 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.59E-41 | 33 | 160 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.3E-28 | 36 | 100 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.0E-17 | 64 | 82 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 67 | 83 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 5.0E-17 | 83 | 101 | No hit | No description |
PRINTS | PR00615 | 5.0E-17 | 102 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MESDTKFVVS KMVDNTGAAG AGASSDDGGI KEQERLLPIA NVGRIMKQIL PANAKISKEA 60 KETMQECVSE FISFITSEAS EKCRKERRKT VNGDDICWAL GTLGFDDYAG PIRRYLHKYR 120 ELEGERANQQ DKASNSNSNI NINEEREEPA GSSYGADDEQ ITRNQALASI SFKSNVNERS 180 NSFNSRRY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 3e-43 | 30 | 121 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 3e-43 | 30 | 121 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006419612.1 | 1e-129 | nuclear transcription factor Y subunit B-4 | ||||
Refseq | XP_006489109.1 | 1e-129 | nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | O82248 | 4e-58 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A067G9B0 | 1e-136 | A0A067G9B0_CITSI; Uncharacterized protein | ||||
STRING | XP_006489109.1 | 1e-128 | (Citrus sinensis) | ||||
STRING | XP_006419612.1 | 1e-128 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM255 | 28 | 229 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 2e-60 | nuclear factor Y, subunit B5 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g044287m |
Publications ? help Back to Top | |||
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