PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044150m
Common NameCISIN_1g044150mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 382aa    MW: 41844.2 Da    PI: 7.5218
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044150mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.4e-18298331134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +
  orange1.1g044150m 298 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGR 331
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.3E-15292346IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.28E-14294356No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14296329IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.569296328IPR000679Zinc finger, GATA-type
CDDcd002026.21E-14297345No hitNo description
PfamPF003201.9E-16298331IPR000679Zinc finger, GATA-type
PROSITE patternPS003440298323IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MLYQTHHLNF FQFHTFTPIH LSATSLLSSP PPPPPPTDFQ DMECVEAALK TSLRKEMALK  60
LSPQAVDEIC AVNLPNGVAC DDFFVDDLLD FSNEDVVAEQ QQLQEPQQEK GEEQKKHTLT  120
VCSKQDQDLD ERLNFDDLGP IPTSELAVPT DDVANLEWLS HFVEDSFAEY SSPFPAGTLP  180
VKAKENGAEP EHKPALAIHC FKTPIPAKAR SKRSRTGLRI WSLGSPSLSD SSSTSSASSS  240
SSPSSPWPVS TNPGSLASLR PAEPFIVKPP KKKLKKKSPP EGYNAGGNIS WGQVTRRCSH  300
CGVQKTPQWR TGPLGAKTLC NACGVRYKSG RLFPEYRPAC SPTFSSELHS NHHRKVMEMR  360
RKKEGLGRTE PGLAPAVVSS F*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425558.10.0GATA transcription factor 5
RefseqXP_006466892.10.0GATA transcription factor 5-like
SwissprotQ9FH571e-84GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A067FUM80.0A0A067FUM8_CITSI; GATA transcription factor
STRINGXP_006466892.10.0(Citrus sinensis)
STRINGXP_006425558.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.28e-77GATA transcription factor 5