PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g044109m

Common Name

CISIN_1g044109mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 236aa MW: 25988.3 Da PI: 7.2067

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g044109m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H orange1.1g044109m 89 FSCNYCQRKFYSSQALGGHQNAH 111 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.02E-6	86	116	No hit	No description
PROSITE profile	PS50157	11.427	89	116	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MESLSKDPSP SEASSIISTP EENKVGDHEE EAKATLSFDL NLDRSDSDDQ GFNQELNLID 60 SLNNTGSSSQ ISSETPHATN DHPSEQRVFS CNYCQRKFYS SQALGGHQNA HKRERTLAKR 120 GQRIGTYTAA SPFAFGQPYL HQNHYSSISS LPLHGAAYNR SLGIQVHSMI HKPSHTSTSH 180 GNGNIYGHNN WSRPPIEQQP AIGRLSSMEN YYSTAAAATS SRRFSLVRNM MGSSSQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the chalaze of seeds, hypocotyls, cotyledons, roots, emerging lateral roots, leaves, sepals and stamens. These data suggest that ZFP3 is expressed in most organs, showing high expression in vascular tissues.

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269\|PubMed:24808098}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269\|PubMed:24808098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450313.1	1e-175	zinc finger protein 3
Refseq	XP_006483451.1	1e-175	zinc finger protein 3-like
Swissprot	Q39262	1e-46	ZFP3_ARATH; Zinc finger protein 3
TrEMBL	A0A067FJB6	1e-174	A0A067FJB6_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006483451.1	1e-174	(Citrus sinensis)
STRING	XP_006450313.1	1e-174	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1893	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	4e-53	C2H2 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g044109m

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Zhang A, et al. The Arabidopsis Gene zinc finger protein 3(ZFP3) Is Involved in Salt Stress and Osmotic Stress Response. PLoS ONE, 2016. 11(12): p. e0168367 [PMID:27977750]