PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g043963m | ||||||||
Common Name | CISIN_1g043963mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 316aa MW: 36288.7 Da PI: 9.6797 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.7 | 3e-13 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+ + r +t+ kR+ g+ KKA+E +LC++ ++ii++++ orange1.1g043963m 10 LIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPR 51 5888999*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 5.76E-16 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.1 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-11 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.17E-17 | 2 | 81 | No hit | No description |
PRINTS | PR00404 | 2.1E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.3E-15 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGRGKLTLKL IDKEKARMIT YQKRKRGLKK KAQEFATLCG VPTCMIIYGP RLNSHPGSVD 60 VEVWPKDHKE FMQVVNLYRD KAFTSVHGVK SQNLYDFFAD RNRKVYEKIV KIRKANFESK 120 FSSDLDEDFN NFSMHQLKGM LVVLDNNIDV ATRKLALIKG HHQNFGCYND NNNANNSAQV 180 LFQQPQPLAS HHVNMQLASY HHHEPIQMVS FDFNPVDNPT MMMMLMNGGD QIQLGCNTTA 240 LYNHHHPMQH AVYCDPVGAM IENRVMMNNP RAAMRFVGST MQQFQPFIEQ FPALPSPQFN 300 GFYGDNGFLR KREKL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006464863.1 | 0.0 | agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A067EE55 | 0.0 | A0A067EE55_CITSI; Uncharacterized protein | ||||
STRING | XP_006464863.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16227 | 9 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 1e-24 | AGAMOUS-like 82 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g043963m |