PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043961m
Common NameCISIN_1g043961mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 181aa    MW: 21154.2 Da    PI: 5.0032
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043961mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.63e-1512102199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffk+   + +l+ + l++p +f++++g +       tl+ ++g +W+v l  ++ ++++++ +GW +Fvk + +    f+vF++ ++s+f  
  orange1.1g043961m  12 FFKII--EETLQDKKLRIPGDFVKKFGDE--LCDVATLRVPNGCVWKVGL--TREGRKIWFNDGWHDFVKNHSIFNDYFLVFEYAKNSTF-- 95 
                        67777..78888999********999755..55699**************..********************************999999.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                         v +f+k
  orange1.1g043961m  96 DVLIFDK 102
                        9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-226105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-218105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.11210103IPR003340B3 DNA binding domain
CDDcd100171.34E-1410101No hitNo description
SMARTSM010194.8E-1212103IPR003340B3 DNA binding domain
PfamPF023621.3E-1212102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAESITAEPF RFFKIIEETL QDKKLRIPGD FVKKFGDELC DVATLRVPNG CVWKVGLTRE  60
GRKIWFNDGW HDFVKNHSIF NDYFLVFEYA KNSTFDVLIF DKTACEIEYT CAELENEKQN  120
DGKKSKLREV AYEDEYKFVA VLEEMGICIS GAYKFLSVEE RQRIIYASRL FRLENPSFFS  180
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480064.11e-120B3 domain-containing transcription factor VRN1-like
TrEMBLA0A067EE891e-130A0A067EE89_CITSI; Uncharacterized protein
STRINGXP_006480064.11e-119(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-30B3 family protein