PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043911m
Common NameCISIN_1g043911mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 89aa    MW: 10685.2 Da    PI: 8.4639
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043911mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM661.1e-20589386
                NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
                       +GfrF+P++e+++ + L+kk  + ++   ++ik++ di+++ePwdL   +k+++e++ +yfF k   ky++++r++r t++gyWk t
  orange1.1g043911m  5 MGFRFQPSNEQII-CLLEKKRLNPRFLH-HTIKDIdDICSLEPWDLAgaSKTESEDQVCYFFYKPYYKYKESTRAHRRTNAGYWKVT 89
                       7************.77888888877655.67***999*********8533666777788*************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.621389IPR003441NAC domain
SuperFamilySSF1019411.31E-19489IPR003441NAC domain
PfamPF023652.2E-7587IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MESLMGFRFQ PSNEQIICLL EKKRLNPRFL HHTIKDIDDI CSLEPWDLAG ASKTESEDQV  60
CYFFYKPYYK YKESTRAHRR TNAGYWKVT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477535.21e-59NAC domain-containing protein 86-like
TrEMBLA0A067G3067e-62A0A067G306_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006477535.13e-59(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.19e-13NAC 014