PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g043851m

Common Name

CISIN_1g043851mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 388aa MW: 43747.5 Da PI: 6.3909

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g043851m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.6e-07	156	180	7	34
HHHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 7 erErrRRdriNsafeeLrellPkaskap 34 + Er+RR ++N++f+ Lr l+P++ + orange1.1g043851m 156 ISERQRRVEMNDKFAVLRNLVPNP---N 180 67*********************8...3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.019	149	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.95E-5	152	184	No hit	No description
SuperFamily	SSF47459	9.42E-7	152	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-6	156	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-5	156	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MYEEIADFFD PNSMTEDAAV AFNGENFNPI NTHLIHDPNQ VLQYEQSNWD SQQANGQQAP 60 DLFNLLHLSP GCHGLTGHLP SSSIAPPALY DPIFHSNLPS QQPPLFGEFF QSSNYEDGNG 120 GHFNNCVLDE FNGDIGMAFT GTKRVKATGK AKKPIISERQ RRVEMNDKFA VLRNLVPNPN 180 NKVRIYLISS VKVVNLLIKN MVNFLIICTN NKLRVIEHRW WEMLVSTSKS FRDRSMSSNH 240 LWSEKDLQEK LGATNERHNI EGCDHDMKPA PLVDPNNTAS LRSSWLQRKS KDIEVDVRIV 300 DDEVTVKILQ RKKIDNCLLF LSKVFDEMQL DLQHVAGGHI GDYYSFLLNS KIHEGSCVYA 360 GAIVNKLIEV MDRQYAAASI APMNCSN*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MYEEIADFFD PNSMTEDAAV AFNGENFNPI NTHLIHDPNQ VLQYEQSNWD SQQANGQQAP  60
DLFNLLHLSP GCHGLTGHLP SSSIAPPALY DPIFHSNLPS QQPPLFGEFF QSSNYEDGNG  120
GHFNNCVLDE FNGDIGMAFT GTKRVKATGK AKKPIISERQ RRVEMNDKFA VLRNLVPNPN  180
NKVRIYLISS VKVVNLLIKN MVNFLIICTN NKLRVIEHRW WEMLVSTSKS FRDRSMSSNH  240
LWSEKDLQEK LGATNERHNI EGCDHDMKPA PLVDPNNTAS LRSSWLQRKS KDIEVDVRIV  300
DDEVTVKILQ RKKIDNCLLF LSKVFDEMQL DLQHVAGGHI GDYYSFLLNS KIHEGSCVYA  360
GAIVNKLIEV MDRQYAAASI APMNCSN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024948017.1	0.0	transcription factor bHLH91-like
TrEMBL	A0A067FQQ5	0.0	A0A067FQQ5_CITSI; Uncharacterized protein
STRING	XP_006490222.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	orange1.1g043851m