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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
orange1.1g043764m |
| Common Name | CISIN_1g043764mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
GRAS |
| Protein Properties |
Length: 460aa MW: 51457 Da PI: 6.1502 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g043764m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 308.7 | 1.4e-94 | 53 | 455 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevs 88
++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+ f++AL +r a+ s+++k l++ ++++ n + + + +++ f++++
orange1.1g043764m 53 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCAFLRALITRAAK--SGTCKMLAAMANAHCNLVVHNHKFSVielasFVDLT 142
79****************************************************..8888888888887777444444443334488***** PP
GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177
P+++f++ +aN aIleav+g++ vHi+D+++++++Q p+L++a+a+R egpp+l++T+ g+ e + ++ee+g +L +fA++ +v +e
orange1.1g043764m 143 PWHRFGFTAANAAILEAVDGCSVVHIVDLSLTHCMQIPTLIDAIANRFEGPPRLKLTVAGATEDVppmLDLSYEELGTKLVNFARSRNVMLE 234
*************************************************************887798888999******************* PP
GRAS 178 fnvl.......vakrledleleeLrvkp.gEalaVnlvlqlhrll....................desvsleserdevLklvkslsPkvvvv 241
f+v+ a+ +e++++++L + gEal++n++++lh+++ +s+s++ r+ +Lk+++sl+P++vv+
orange1.1g043764m 235 FRVIpssyadgFASLIEQMRVQQLVYAEsGEALVINCHMMLHYIPeetlnpsttfsslnpysleyYSSTSIS-LRSMFLKAIRSLEPTIVVL 325
****9997766666777778888877779**********************************964444444.488**************** PP
GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
v+++ad+++++++ r+ +a++y + +d +++ lpr s++r ++E++ + ++++nv+a+eg +r+er e +++W +r+++a F+ ++++e+a
orange1.1g043764m 326 VDEDADLTANNLVCRLRSAFNYLWIPYDLVDTFLPRGSKQREWYEAA-VCWKVENVIAHEGLQRVERLEPKSRWVQRMRNANFRGITFGEEA 416
***********************************************.99****************************************** PP
GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+++ k++l +++ g+ +++e++ lvl+Wk+++ v++SaW
orange1.1g043764m 417 VSELKTMLDEHA-AGWGLKKEEDDLVLTWKGHNAVFASAW 455
************.8999*********************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 460 aa
Download sequence Send
to blast |
MMQFTETPPP PLHQISSFSN FTMNKNQIHR TRPWPGFPSS KSFASFGDAN CMEQLLVHCA 60
NAIESNDATL AQQILWVLNN IAPPDGDSNQ RLTCAFLRAL ITRAAKSGTC KMLAAMANAH 120
CNLVVHNHKF SVIELASFVD LTPWHRFGFT AANAAILEAV DGCSVVHIVD LSLTHCMQIP 180
TLIDAIANRF EGPPRLKLTV AGATEDVPPM LDLSYEELGT KLVNFARSRN VMLEFRVIPS 240
SYADGFASLI EQMRVQQLVY AESGEALVIN CHMMLHYIPE ETLNPSTTFS SLNPYSLEYY 300
SSTSISLRSM FLKAIRSLEP TIVVLVDEDA DLTANNLVCR LRSAFNYLWI PYDLVDTFLP 360
RGSKQREWYE AAVCWKVENV IAHEGLQRVE RLEPKSRWVQ RMRNANFRGI TFGEEAVSEL 420
KTMLDEHAAG WGLKKEEDDL VLTWKGHNAV FASAWVPAA*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
