PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g043700m | ||||||||
Common Name | CISIN_1g043700mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | BES1 | ||||||||
Protein Properties | Length: 189aa MW: 21035.8 Da PI: 9.7874 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 125.8 | 5.4e-39 | 35 | 105 | 3 | 73 |
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgs 73 + r p++kEr +nk RE rRRa+a i+aGLR++Gnyklpk+aDnn+ lkALc eAGw ve+DGtty+k+ orange1.1g043700m 35 KYRFPSEKERQRNKEREQRRRAVAKNIFAGLRKYGNYKLPKHADNNDLLKALCVEAGWHVEEDGTTYKKQE 105 6799****************************************************************864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.3E-36 | 36 | 107 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MVDGKIKNAL SGCIKTTKGP WKVHKTTKDG AKVTKYRFPS EKERQRNKER EQRRRAVAKN 60 IFAGLRKYGN YKLPKHADNN DLLKALCVEA GWHVEEDGTT YKKQEFVSGL PSLISIELPS 120 RTLVTIEDQS GDQDYCTCNN QMVSFEESQE GFGVNLSLSL SLASSSSNLQ RRGLGPGEIG 180 DGLRARRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 9e-17 | 37 | 103 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 9e-17 | 37 | 103 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 9e-17 | 37 | 103 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 9e-17 | 37 | 103 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024038454.1 | 1e-123 | protein BRASSINAZOLE-RESISTANT 1 isoform X1 | ||||
Refseq | XP_024956044.1 | 1e-123 | protein BRASSINAZOLE-RESISTANT 1-like isoform X1 | ||||
TrEMBL | A0A067F7H0 | 1e-137 | A0A067F7H0_CITSI; Uncharacterized protein | ||||
STRING | XP_006429487.1 | 4e-71 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19597 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50750.1 | 2e-20 | BES1/BZR1 homolog 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g043700m |