PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g043618m | ||||||||
Common Name | CISIN_1g043618mg, LOC102607586 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 311aa MW: 34635.2 Da PI: 7.1096 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.5e-13 | 105 | 156 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++++ ++ Lr+l+P++ + ++ + a+i+ A++Y+k+L+ orange1.1g043618m 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPS---YVQRGDQASIVGGAINYVKELE 156 79****************************...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.41E-13 | 103 | 160 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.7E-13 | 103 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.002 | 104 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-16 | 104 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-10 | 105 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-9 | 110 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MALEAVVFQQ DPFSYGFKDL GETSDPWSCG FGLEEGAAHS EILLQNGGLG LMTQKMAKTN 60 SSTCGGGGDG FFTGESRPLE PPLACHLRKR RRTRSVKNIE EVESQRMTHI FVERNRRKQM 120 KNYLSVLRSL MPPSYVQRGD QASIVGGAIN YVKELEQLVQ TLEVHKRIHI LQQSDDHDHD 180 DAGFSTSIFS NFFSFPQYSD FRPNDSRESS STAPKKPSGP VADIEVTMAE SNANIKILST 240 RYPKQLFKMV TGFHSLGLHV LHLNVATFDN QVLYTFSVKV EEGCHLRSMN EVAAAVYDMM 300 GRVQGEAAFK * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 91 | RKRRR |
2 | 87 | 92 | RKRRRT |
3 | 105 | 116 | RMTHIFVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006466564.1 | 0.0 | transcription factor bHLH94 | ||||
TrEMBL | A0A067EZU7 | 0.0 | A0A067EZU7_CITSI; Uncharacterized protein | ||||
STRING | XP_006466564.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1116 | 27 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 8e-65 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g043618m |
Entrez Gene | 102607586 |