PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043513m
Common NameCISIN_1g043513mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 407aa    MW: 47098.9 Da    PI: 5.4081
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043513mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.91.4e-2581401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkat 86 
                        lp+G++F P++e+lv++yL +k++g ++++ e  +k+vd+y++ ePwd+ k++ +    + +++yfF++ +kk+ +g+r nr++ sg W+  
  orange1.1g043513m   8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYfVKDVDLYDYeEPWDIWKQFGGpnleDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGE 99 
                        799************************9988877*******9878****753333333356789**************************99 PP

                NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           + vls+ +++ +g kk++ + + + p+  +  W+mhey+l
  orange1.1g043513m 100 DAGELVLSRnSNRPIGSKKIFRYENDNFPH--NRCWIMHEYTL 140
                        99999999856677*********9666666..899******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-327162IPR003441NAC domain
PROSITE profilePS5100532.1468163IPR003441NAC domain
PfamPF023655.3E-169140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MQERSRILPV GCKFLPSEEQ LVHYYLFNKI SGIPTPFVEY FVKDVDLYDY EEPWDIWKQF  60
GGPNLEDGED LYFFTNLKKK SINGSRINRK VGSGAWQGED AGELVLSRNS NRPIGSKKIF  120
RYENDNFPHN RCWIMHEYTL NASLLPQNHH SSSDCVLCRL RKNGGQSVGI KDSRKKIKND  180
KQVQDNDHQP AGKSNSRKRV KFEHQVNDND QPDEPFVENH QNQYVQENQS QPLNERSPHK  240
LLESSVKNNP EEKPPVPRTK QTLLEQIEHL AENGYPSTFE ENQQQPMTEP NLHNQLELSQ  300
NHPLMEQTPS YLLKGQEENH QLAVTEQNPH HLELSDNHQN MNHTSSSNLE ENQLPATEQS  360
HDDAIYSELT DINSWVVHQL TRIDDATYPH LADDKFLVSN ELVYTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-16816015165Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482375.10.0NAC domain-containing protein 30-like
TrEMBLA0A067D4C70.0A0A067D4C7_CITSI; Uncharacterized protein
STRINGXP_006482375.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3298222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.27e-21NAC domain containing protein 47