PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g043508m | ||||||||
Common Name | CISIN_1g043508mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HRT-like | ||||||||
Protein Properties | Length: 368aa MW: 40707.5 Da PI: 9.3289 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 58.9 | 8e-19 | 119 | 149 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+dGs+C+r+P kgRKRC +HKG Ri orange1.1g043508m 119 ICGVSLDDGSICRRPPLKGRKRCTQHKGLRI 149 8*****************************7 PP | |||||||
2 | HRT-like | 58.6 | 9.8e-19 | 231 | 261 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv +dG++C+rqPvkgR RCeeHKGm+i orange1.1g043508m 231 ICGVESGDGTFCSRQPVKGRVRCEEHKGMKI 261 8****************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MENKADALNT ESELLSTFDY AWNKGSNGTR RHYDVLWKLN TIASDNIQFP QSIRKLLYFS 60 QKPAGIKIKA SKLPSKQNNC GTYADEEGHS FFSQIFKFTK SQPRLVLERH VTDEDRTVIC 120 GVSLDDGSIC RRPPLKGRKR CTQHKGLRIS RSNPVKPPVI EEMCTVSEEH KWRSTNGSNS 180 NILGASEYVR NVDFDANACN YSDSSEMSRS GRVQPQVFSK RFTTKPNSDT ICGVESGDGT 240 FCSRQPVKGR VRCEEHKGMK IKGIKSKSAE EDKSNVYDAG SKLSTFNEED FCSAVCGAQT 300 LNGSYCRRPV KGNTNCWQHS KQSSNKGSTN SPCKGWSSGG TSICGAPTHN GSYCKRTVKG 360 GGSCWQH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024033802.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | A0A067EVV1 | 0.0 | A0A067EVV1_CITSI; Uncharacterized protein | ||||
STRING | XP_006451430.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2954 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 7e-42 | effector of transcription2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g043508m |