PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043508m
Common NameCISIN_1g043508mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HRT-like
Protein Properties Length: 368aa    MW: 40707.5 Da    PI: 9.3289
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043508mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like58.98e-19119149131
           HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                        iCGv l+dGs+C+r+P kgRKRC +HKG Ri
  orange1.1g043508m 119 ICGVSLDDGSICRRPPLKGRKRCTQHKGLRI 149
                        8*****************************7 PP

2HRT-like58.69.8e-19231261131
           HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                        iCGv  +dG++C+rqPvkgR RCeeHKGm+i
  orange1.1g043508m 231 ICGVESGDGTFCSRQPVKGRVRCEEHKGMKI 261
                        8****************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MENKADALNT ESELLSTFDY AWNKGSNGTR RHYDVLWKLN TIASDNIQFP QSIRKLLYFS  60
QKPAGIKIKA SKLPSKQNNC GTYADEEGHS FFSQIFKFTK SQPRLVLERH VTDEDRTVIC  120
GVSLDDGSIC RRPPLKGRKR CTQHKGLRIS RSNPVKPPVI EEMCTVSEEH KWRSTNGSNS  180
NILGASEYVR NVDFDANACN YSDSSEMSRS GRVQPQVFSK RFTTKPNSDT ICGVESGDGT  240
FCSRQPVKGR VRCEEHKGMK IKGIKSKSAE EDKSNVYDAG SKLSTFNEED FCSAVCGAQT  300
LNGSYCRRPV KGNTNCWQHS KQSSNKGSTN SPCKGWSSGG TSICGAPTHN GSYCKRTVKG  360
GGSCWQH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033802.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A067EVV10.0A0A067EVV1_CITSI; Uncharacterized protein
STRINGXP_006451430.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.17e-42effector of transcription2