PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g043478m | ||||||||
Common Name | CISIN_1g043478mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 145aa MW: 16828.3 Da PI: 7.5013 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.9 | 5.6e-06 | 107 | 139 | 17 | 54 |
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 N++f Lr+++P + ++Ka+iL +++Y+k L orange1.1g043478m 107 NEKFMLLRSVVPYiS------EVDKASILNDTIKYLKRL 139 99***********66......8***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00353 | 4.5E-5 | 100 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-8 | 106 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.44E-5 | 107 | 144 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-6 | 107 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MSHIQLKELQ EGNHMKLSSL DLGIDDDAYY KKTLFAIFGR SNQLNDNLSF LSVEHKSSFE 60 NLFSVPLMYG GCAHRSPKEI CRKYCPLTME SENFCEEHVS LDKRTKNEKF MLLRSVVPYI 120 SEVDKASILN DTIKYLKRLK ARVEE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF645810 | 4e-68 | EF645810.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 MYC2 gene, complete cds. | |||
GenBank | EF645811 | 4e-68 | EF645811.1 Citrus sinensis cultivar Valencia MYC2 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445042.1 | 2e-71 | transcription factor EGL1 isoform X1 | ||||
Refseq | XP_006491098.1 | 2e-71 | transcription factor EGL1 | ||||
Refseq | XP_024045649.1 | 1e-71 | transcription factor EGL1 isoform X2 | ||||
TrEMBL | A0A067G4D1 | 1e-103 | A0A067G4D1_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006491098.1 | 6e-71 | (Citrus sinensis) | ||||
STRING | XP_006445042.1 | 6e-71 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00480.1 | 4e-16 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g043478m |