PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g043261m | ||||||||
Common Name | CISIN_1g043261mg, LOC102607708 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 234aa MW: 25338.1 Da PI: 7.1695 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.2 | 4e-33 | 44 | 100 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +++rY+eClkNhA+s+GghavDGCgEfm++ g+egt ++lkCaAC+CHRnFHR+e++ orange1.1g043261m 44 KSIRYRECLKNHAVSIGGHAVDGCGEFMAA-GDEGTLESLKCAACNCHRNFHRKETDG 100 5789*************************9.999*********************875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-23 | 25 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.7E-31 | 46 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.5E-30 | 47 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.348 | 48 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.09E-21 | 157 | 231 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-32 | 159 | 232 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.9E-28 | 170 | 226 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MEFEEHEEQE VEEMGAAEYE SMTNASKATG PTAGGEGASA AARKSIRYRE CLKNHAVSIG 60 GHAVDGCGEF MAAGDEGTLE SLKCAACNCH RNFHRKETDG ASPLAYHHQQ QQFSPYYRGP 120 PPPAPAGYLH LTAAQPRPLA LPSSSAGGYS REEEDVSNPS SSGGGSGGTK KRHRTKFTAE 180 QKEKMLGFAE QLGWRIQKHD EASVEQFCAE TGVKRHVLKV WMHNNKHTLG KKP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-30 | 169 | 228 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Csi.1401 | 0.0 | callus| flower| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006433874.1 | 1e-174 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_006472516.1 | 1e-174 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9SB61 | 7e-80 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A067GQY3 | 1e-173 | A0A067GQY3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NMW3 | 1e-173 | A0A2H5NMW3_CITUN; Uncharacterized protein | ||||
TrEMBL | V4V577 | 1e-173 | V4V577_9ROSI; Uncharacterized protein | ||||
STRING | XP_006472516.1 | 1e-173 | (Citrus sinensis) | ||||
STRING | XP_006433874.1 | 1e-173 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-70 | homeobox protein 22 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g043261m |
Entrez Gene | 102607708 |
Publications ? help Back to Top | |||
---|---|---|---|
|