PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043175m
Common NameCISIN_1g043175mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 140aa    MW: 16163.5 Da    PI: 9.9714
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043175mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.95.1e-3351313128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        +GfrF+P++e++  + L+kk  + +++  ++ik++ di+ +ePwdL   +k+++e++ +yfF+k   ky++++r++r t++gyWk tg+  +
  orange1.1g043175m   5 MGFRFQPSNEQIF-CLLEKKRLNPHFSH-HTIKDIdDICGLEPWDLAgaSKTESEDRVCYFFCKPCYKYKKSTRAHRRTNAGYWKVTGRGSK 94 
                        7**********99.88999999999888.77***999*********8533777788899********************************* PP

                NAM  92 vlskkgelvglkktLvf.ykgrapkgektdWvmheyrl 128
                        +++ ++ l g+kk+L+f y+g a+k  k  Wvmhey++
  orange1.1g043175m  95 IKT-RNGLSGTKKILTFqYHGPASKKAKIGWVMHEYHV 131
                        **9.8889*********569999999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.1283139IPR003441NAC domain
SuperFamilySSF1019419.42E-344136IPR003441NAC domain
PfamPF023651.2E-175131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MESLMGFRFQ PSNEQIFCLL EKKRLNPHFS HHTIKDIDDI CGLEPWDLAG ASKTESEDRV  60
CYFFCKPCYK YKKSTRAHRR TNAGYWKVTG RGSKIKTRNG LSGTKKILTF QYHGPASKKA  120
KIGWVMHEYH VNDDPSYKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-16613123145NAC domain-containing protein 19
3swm_B4e-16613123145NAC domain-containing protein 19
3swm_C4e-16613123145NAC domain-containing protein 19
3swm_D4e-16613123145NAC domain-containing protein 19
3swp_A4e-16613123145NAC domain-containing protein 19
3swp_B4e-16613123145NAC domain-containing protein 19
3swp_C4e-16613123145NAC domain-containing protein 19
3swp_D4e-16613123145NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476702.31e-103protein NTM1-like 9
TrEMBLA0A067FUK91e-101A0A067FUK9_CITSI; Uncharacterized protein
STRINGXP_006476702.11e-102(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-21NAC transcription factor-like 9