PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g043170m | ||||||||
Common Name | CISIN_1g043170mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | SRS | ||||||||
Protein Properties | Length: 143aa MW: 16073.8 Da PI: 8.236 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 84.5 | 2.5e-26 | 76 | 128 | 6 | 58 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaa 58 +C+dCGn+ak+ C+++RCRtCCk+r fdC+thv+stWvpaakrr++ + + orange1.1g043170m 76 RACRDCGNRAKRACSFRRCRTCCKTRRFDCTTHVRSTWVPAAKRRQKTKLITG 128 58********************************************9877655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 7.5E-24 | 76 | 126 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.6E-22 | 78 | 119 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MLNLRDIIFV APPPQPPSIS SDHHHQDGDD DDDNDRNTSN LHKTGFWGLK KWQEESHTDV 60 EGASDDHDGD HSGLMRACRD CGNRAKRACS FRRCRTCCKT RRFDCTTHVR STWVPAAKRR 120 QKTKLITGGS SSVLSFSTTA SCQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006494070.1 | 1e-103 | protein SHI RELATED SEQUENCE 6 | ||||
TrEMBL | A0A067DF28 | 1e-101 | A0A067DF28_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006494070.1 | 1e-103 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11959 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 4e-08 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g043170m |