PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043113m
Common NameCISIN_1g043113mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 173aa    MW: 20032.9 Da    PI: 9.7036
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043113mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.25.1e-091541127
                       S---SHHHHHHHHHHHHHHHHHHHHHH CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeEL 27
                       k+ien+  r +tfskR  gi KKA+E+
  orange1.1g043113m 15 KKIENEDDRLITFSKRGSGIYKKASEI 41
                       68************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0015772IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.423741IPR002100Transcription factor, MADS-box
CDDcd001205.46E-13840No hitNo description
SuperFamilySSF554555.36E-12865IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-8929IPR002100Transcription factor, MADS-box
PfamPF003194.5E-81641IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-82944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MAGKKTKRRQ KIEMKKIENE DDRLITFSKR GSGIYKKASE IWEAIHLCQP SVKAIANRFL  60
GMSQLHNDNI HPLVKAYSHA RINELNQQHN DLLRQLDEEK EQQNMLKQMR RVKETQPRWW  120
ETPVDELNLQ ELLQMDSAVD DLHQTFLAKI NEKTAAAAAS SSVAPPMYFH NK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492960.13e-82agamous-like MADS-box protein AGL62
RefseqXP_006492962.13e-82agamous-like MADS-box protein AGL62
RefseqXP_006492963.13e-82agamous-like MADS-box protein AGL62
TrEMBLA0A067D8T11e-125A0A067D8T1_CITSI; Uncharacterized protein
STRINGXP_006492960.11e-81(Citrus sinensis)
STRINGXP_006492962.11e-81(Citrus sinensis)
STRINGXP_006492963.11e-81(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.19e-24AGAMOUS-like 57