PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043072m
Common NameCISIN_1g043072mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 268aa    MW: 29898.5 Da    PI: 9.8426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043072mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH223e-07176216954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ i +++  L++++P       +K++ a++L +A++Y+k L
  orange1.1g043072m 176 ARHRREMISERIRILQRIVPGG-----TKMDTASMLDEAIHYVKFL 216
                        699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.646167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-13168226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-9169221No hitNo description
SuperFamilySSF474593.4E-13171226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-4177216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDVDMIKASQ QAEDHMDMMA VIMQMEKLPE FCEAFNNNIS PLPHEIHFSN ANTNSNISTQ  60
PIYHNPNNYV SSPPPTFTNP SSSLPLFINT TTPVQEPMTP PLHQPNNVVT GGRLKTSLPS  120
PSPYPPTLEK RNSMAAMREM IFRIAAMQPI HIDPESIKPP KRRNVKISKD PQSVAARHRR  180
EMISERIRIL QRIVPGGTKM DTASMLDEAI HYVKFLKKQV HTLEQAGAHR PMGGVGFQGA  240
PMAGVAYPSL VKASHQMVDN INMQMFR*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}.
UniprotTISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425907.10.0transcription factor HEC2
SwissprotQ9SND49e-47HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A067GKM30.0A0A067GKM3_CITSI; Uncharacterized protein
STRINGXP_006425907.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]