PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042908m
Common NameCISIN_1g042908mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 243aa    MW: 26894.3 Da    PI: 6.8749
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042908mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-08135182455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++iN+++  L++l+P +     k +  a +L   ++Y++sLq
  orange1.1g042908m 135 SHSLAERVRREKINERLRCLQDLVPGC----YKTMGMAVMLDVIINYVRSLQ 182
                        8*************************8....355888888999999988887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-16129200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-11129186No hitNo description
PROSITE profilePS5088815.37131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-16131193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-8137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MALENRNTSD DQPAGVMGFF SNGSFFDHHQ QPQLCMSFAD NNIQSEALVV PSIGLIADFS  60
HDTSNGKKAA AHTVESFMNL SPTPASGSGL LSVNNKGTGM QGLSGRKRKR NNERVVEKPK  120
EVIHVRAKRG QATDSHSLAE RVRREKINER LRCLQDLVPG CYKTMGMAVM LDVIINYVRS  180
LQNQIEFLSM KLSAASMYYD FNSELDTTET MPGTNECDAQ DMERMVREGY GGPSYFHSAW  240
SL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.30710.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024951187.10.0transcription factor bHLH75-like isoform X1
SwissprotA4D9983e-56BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A067GNR60.0A0A067GNR6_CITSI; Uncharacterized protein
STRINGXP_006448451.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140812024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-58bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]