PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042649m
Common NameCISIN_1g042649mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 200aa    MW: 22767.2 Da    PI: 9.1334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042649mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-113477755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        +ErrRR+++ +++ +Lr+l+P       + ++Ka+i+e A+ YI +Lq
  orange1.1g042649m 34 TAERRRREKLSNRLLTLRSLVPII-----TNMNKATIVEDAITYIEKLQ 77
                       68*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-162492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-92577No hitNo description
PROSITE profilePS5088814.2722776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-103382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-143394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-83477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEFVGSASTQ SCITQKRGRR VYGDDRDFKS KNLTAERRRR EKLSNRLLTL RSLVPIITNM  60
NKATIVEDAI TYIEKLQMTV KVLSDQLLEM ESSSEESERP RNDEINAAEE MKKHGIEEKV  120
EVTNVDGCKL WIRIISKKKR SRITKFLEAM ASHGFELSDT NVTTFKGATL ISSCLNGVYS  180
YKIEAEQVKE LLQEIIKSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540ERRRRE
23641RRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046743.11e-142transcription factor DYT1
TrEMBLA0A067GJZ31e-143A0A067GJZ3_CITSI; Uncharacterized protein
STRINGXP_006468225.11e-141(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83582538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-38bHLH family protein