PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042542m
Common NameCISIN_1g042542mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 360aa    MW: 41391.6 Da    PI: 9.571
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042542mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.23e-13311101196
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         + + + +p +f+ ++g +   s   tl++++g + ++ +  +kk g++++ +GW+eFv+ + + +g fvvF++ ++s+f   v v
  orange1.1g042542m  31 IEDKKMKIPQNFVGRFGDE--LSYVATLTNPKGYVVRIGI--TKKEGKIWFDDGWNEFVQYHSIGVGYFVVFQYRKNSKF--QVFV 110
                        455679*******999855..999****************..********************************998998..5544 PP
2B344.23.6e-14270357497
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                        v++++++++++++++p++fa+++ + +e+   +t++d++gr+  vk+  + + ++++lt  W +F k  ++kegD++ F++++ ++  l+v+
  orange1.1g042542m 270 VFLRASNMQLNCVYVPNSFARKYFNGEEC---VTIQDSDGRKLAVKV--KVSCSKCLLT-RWGKFFKKTNVKEGDILFFEMIQMKNILLKVS 355
                        456778888888***********666666...9**************..9999999999.9*******************998777767777 PP

                        EE CS
                 B3  96 vf 97 
                        vf
  orange1.1g042542m 356 VF 357
                        77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1913113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1815113IPR015300DNA-binding pseudobarrel domain
CDDcd100179.13E-1221112No hitNo description
PROSITE profilePS5086311.49121114IPR003340B3 DNA binding domain
SMARTSM010198.6E-622114IPR003340B3 DNA binding domain
PfamPF023623.7E-1131110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-15262358IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-14263356IPR015300DNA-binding pseudobarrel domain
CDDcd100174.84E-12266358No hitNo description
PROSITE profilePS508639.093267359IPR003340B3 DNA binding domain
SMARTSM010190.0015268358IPR003340B3 DNA binding domain
PfamPF023621.4E-13270357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAFRRRAEPK MASSMKKTNS LFFQVILAVT IEDKKMKIPQ NFVGRFGDEL SYVATLTNPK  60
GYVVRIGITK KEGKIWFDDG WNEFVQYHSI GVGYFVVFQY RKNSKFQVFV FNTTTFEIQY  120
PSRNMFPPSR QNQATVNSSK SKNGCKMQSK TYRMEELEVN DELDNVNDSI QDIIGTSNSE  180
GSVHAKVHLS ETQCLSVQET DLKIDSTKFK KAKHNLKYEL RADSVDQIKS IALLEDMDTY  240
DCESRMTLEE KQEAINVARF LKPEKPSFLV FLRASNMQLN CVYVPNSFAR KYFNGEECVT  300
IQDSDGRKLA VKVKVSCSKC LLTRWGKFFK KTNVKEGDIL FFEMIQMKNI LLKVSVFNA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.36980.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423232.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A067DTA10.0A0A067DTA1_CITSI; Uncharacterized protein
TrEMBLV4S7Q70.0V4S7Q7_9ROSI; Uncharacterized protein
STRINGXP_006487172.10.0(Citrus sinensis)
STRINGXP_006423232.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1853637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-45B3 family protein