PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g042438m | ||||||||
Common Name | CISIN_1g042438mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 89aa MW: 10218.8 Da PI: 10.7747 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.5 | 2.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskR+ngilKKA+ELSvLCdae+a++ifs++gk y y+s orange1.1g042438m 9 KRIENKTNRQVTFSKRKNGILKKAFELSVLCDAEIALVIFSPSGKAYHYAS 59 79***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.085 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.08E-39 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-33 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MGRGKVELKR IENKTNRQVT FSKRKNGILK KAFELSVLCD AEIALVIFSP SGKAYHYASD 60 HHTMDKIIAR YRREVGQLNS ADQRSRLVQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-24 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 8e-24 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 8e-24 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 8e-24 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 6e-24 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 6e-24 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 6e-24 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 6e-24 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the floral meristem at very early stage of the spikelet (rice flower) development. Expressed in lemmas, paleas and lodicules from early to late stage of flower development. {ECO:0000269|PubMed:10945340}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006493218.1 | 2e-60 | truncated transcription factor CAULIFLOWER A-like isoform X3 | ||||
Refseq | XP_024042220.1 | 2e-60 | truncated transcription factor CAULIFLOWER A isoform X1 | ||||
Refseq | XP_024042221.1 | 2e-60 | truncated transcription factor CAULIFLOWER A isoform X2 | ||||
Refseq | XP_024949192.1 | 2e-60 | truncated transcription factor CAULIFLOWER A-like isoform X4 | ||||
Swissprot | Q6Q9I2 | 7e-32 | MAD15_ORYSJ; MADS-box transcription factor 15 | ||||
TrEMBL | A0A067FE30 | 2e-59 | A0A067FE30_CITSI; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A2H5Q9E7 | 5e-59 | A0A2H5Q9E7_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TEQ5 | 5e-59 | V4TEQ5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006493217.1 | 1e-59 | (Citrus sinensis) | ||||
STRING | XP_006436860.1 | 8e-60 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 2e-32 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g042438m |