PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g042400m | ||||||||
Common Name | CISIN_1g042400mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 166aa MW: 19209.8 Da PI: 7.019 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.8 | 5.4e-16 | 56 | 140 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+ Y+k+ GF v++++ kk ++ ++ tfvC ++g+ e+ +++ ++++ +t+C+a++ + +k+gkwe+ +l+leHnH + orange1.1g042400m 56 YYKGYGKQEGFLVKRRTCKKG-SDEIVKYVTFVCGRNGSFESISSN---ILKPQPIGKTSCHARVGGRVNKEGKWELRTLDLEHNHGII 140 8**************999987.7777999**********9999888...99***********************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-13 | 56 | 140 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MESLQEVHEV EELDEVENNN LEENIGKCHN IETEREVIDK PKIEMLFDNA DEMFTYYKGY 60 GKQEGFLVKR RTCKKGSDEI VKYVTFVCGR NGSFESISSN ILKPQPIGKT SCHARVGGRV 120 NKEGKWELRT LDLEHNHGII PSKTKYFRCN RFIDPRVKRQ IINND* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015380620.1 | 2e-50 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Refseq | XP_024041400.1 | 1e-49 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A067D6B8 | 1e-118 | A0A067D6B8_CITSI; Uncharacterized protein | ||||
STRING | XP_006472948.1 | 1e-47 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17343 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.2 | 7e-12 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g042400m |