PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g042353m | ||||||||
Common Name | CISIN_1g042353mg, LOC102627534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 32653.5 Da PI: 6.7248 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 28 | 78 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a+++a+++l+g orange1.1g042353m 28 CQYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78 68*****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.86E-31 | 28 | 88 | No hit | No description |
Pfam | PF00847 | 1.9E-13 | 28 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-37 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 29 | 87 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-31 | 29 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.827 | 29 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MESYKKSPLK PWKKGPTRGK GGPLNASCQY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA 60 TAEEAAMAYD EAARRLYGPD AYLNLPHLHT DNNNPSSNNK SHNKFKWVPS KNFISMFPSC 120 GLLNVNAQPS VHVIHQRLEE LKKNGIFNQT SSSSSSSGES KVEAPTTCIG DKTLLEAVSV 180 REKEVEISSG NMLGWREEKK QIDLNEFLQQ LGILKEESQA EVTEGTEGSS GAAESESSMK 240 DYGELAAFAD TSFNWDALIE MHGNGIAGHH QLGGFQLYDV QEEVTLPTSI WNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-18 | 29 | 86 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024949507.1 | 0.0 | dehydration-responsive element-binding protein 2F | ||||
Swissprot | Q9SVX5 | 2e-92 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A067E2A5 | 0.0 | A0A067E2A5_CITSI; Uncharacterized protein | ||||
STRING | XP_006493905.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8168 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 1e-73 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g042353m |
Entrez Gene | 102627534 |
Publications ? help Back to Top | |||
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