PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042311m
Common NameCISIN_1g042311mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 237aa    MW: 27502.2 Da    PI: 9.7145
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042311mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.53.4e-1288137250
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkk 50 
                        p Gf F P+deel++ yLk+k+ +k+  +  ++ik++diy + P+dL ++
  orange1.1g042311m  88 PLGFSFYPSDEELLTLYLKNKLLNKPlPPDVDAIKSLDIYMCSPQDLSAT 137
                        78************************5333477**************743 PP
2NAM30.78.9e-1013918387128
                NAM  87 gkdkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                        g++++++ + +++  g kktLvfy+g  ++ +++kt+W+m+ey++
  orange1.1g042311m 139 GSSEKIYGSkSKTPLGYKKTLVFYQGklHQANPTKTSWIMEEYKI 183
                        67778887635667**********8855688889*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-2685208IPR003441NAC domain
PROSITE profilePS5100512.73787230IPR003441NAC domain
PfamPF023653.4E-1488183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MNMGEETELE RRMMSMDMDR QMMMIGRKLN MDMDRQITMM RRRMNADMDR QMMMMRRKMN  60
LNTIPLGRNL NRGRPPIVGR DLNSNLNPLG FSFYPSDEEL LTLYLKNKLL NKPLPPDVDA  120
IKSLDIYMCS PQDLSATPGS SEKIYGSKSK TPLGYKKTLV FYQGKLHQAN PTKTSWIMEE  180
YKIDLNIIQS KSDDPIWTGW VVCKVYNKEK DPRKIEVDIE AYSLLKSKAH PIFPSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067DI751e-173A0A067DI75_CITSI; Uncharacterized protein
STRINGXP_006493927.14e-89(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2396824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33280.11e-10NAC domain containing protein 15